MSU

Meta-Analysis GWA from GBLUP


Juan P. Steibel

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Software

Data
SNP_chip
PRRSV
Meta analysis example
Summary
Data and R functions to  perform meta analysis of several GWA after fitting a GBLUP models.
Platforms: Linux, Mac, Windows
Requirements: R 2.15.1 and newer
Dependencies: None.
Authors: Juan P. Steibel,  Yeni Liliana Bernal Rubio
Contact: steibelj@msu.edu
Download and Run
zip file containing code, data and manual. To USE: 1) decompress file into a folder, 2) follow documentation to use.
Documentation
MA-GWA-GBLUP manual.
Citation
Yeni L Bernal Rubio, Jose L Gualdrón Duarte, Ronald O Bates, Catherine W Ernst, Dan Nonneman, Gary A Rohrer, Andy King, Steven D Shackelford, Tommy L Wheeler, Rodolfo JC Cantet, Juan P Steibel. Meta-analysis of genome-wide association from genomic prediction models. Submitted. **link available upon publication**
To-do list
Incorporating into R package integrating to previous programs (GBLUP-GWA)
Registration
Available upon acceptance of the manuscript.
Meanwhile, if you have questions, please email: steibelj@msu.edu
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