MSU

Plasmodes for RNAseq analyses


Juan P. Steibel

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Software

Data
SNP_chip
PRRSV
R code for plasmode generation.

Summary
R code to generate plasmodes from two publicly available datasets to evaluate properties of RNAseq analysis models.

Requirements: R 2.15.0. Installed packages: DESeq, EdgeR, maanova. Please check sessionInfo here.

Authors: Pablo Reeb and Juan P. Steibel

Contact: steibelj@msu.edu
Download and Run
Download zip file with code and datasets or the R code for each dataset (includes instructions on getting the data):
Null plasmode code
Differentially expressed plasmode code

Documentation
Please follow the documented code
Citation
Evaluating statistical analysis models for RNA sequencing experiments . Reeb, P. and Steibel, J.P. Front. Genet 4:178. 
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