HOMEPAGERESEARCHTEACHINGACTIVITIES

 Instructor
2015:Math 132  (Section 016 and Section 020) (Syllabus;Schedule; Classpage) Office Hour: Friday 14:00-17:00
2014:Math 132  (Section 014 and Section 033)(Syllabus;Schedule;Attendance) Office Hour: Friday 13:30-14:30,16:00-17:00
2013:Math 132  (Section 016 and Section 024)(Syllabus;Schedule;WeBWork) Office Hour: Friday 14:00-17:00

WebWork: https://www1.math.msu.edu/webwork/
Office of the Registrar: https://login.msu.edu/?App=RO_Authorization
Math information Webserver: http://mathdata.msu.edu/
Series of Presentations
MTH995 (Modeling and Computation of human sensory systems), 2013
Mentor (with Prof. Guo-Wei Wei):
Archie Brown III, Summer Research Opportunities Program at MSU, 2012
Rinaldi Romulus, Summer Research Opportunities Program at MSU, 2013
Zhuozhuo Tu, International Exchange Program at Department of Mathematics in MSU, 2013
Fengze Cao, International Exchange Program at Department of Mathematics in MSU, 2014
Useful Links
 1. Fortran codes
John Burkardt:  http://people.sc.fsu.edu/~jburkardt/
Numerical Recipes: http://www.aip.de/groups/soe/local/numres/
Numerical methods: http://tonic.physics.sunysb.edu/docs/num_meth.html
Jon Squire: http://www.csee.umbc.edu/~squire/     http://www.csee.umbc.edu/~squire/cs411_down.shtml#CS455
others: http://www.erogol.com/large-set-machine-learning-resources-beginners-mavens/  http://www.fortran.gantep.edu.tr/compiling-g95-basic-guide.html
http://math.berkeley.edu/~strain/Codes/index.html    ftp://ftp.eos.ncsu.edu/pub/math/zhilin/Packages/
 2. Molecular dynamics
PDB:http://www.rcsb.org/pdb/home/home.do
EMDB:http://www.emdatabank.org/
VMD: http://www.ks.uiuc.edu/Research/vmd/
NMAD: http://www.ks.uiuc.edu/Training/Tutorials/namd/namd-tutorial-unix-html/index.html   https://research.cchmc.org/wiki/index.php/NAMD_Tutorial#Restarting_.28continuing.29_simulation
AMBER: http://ambermd.org/tutorials/
Chimera: https://www.cgl.ucsf.edu/chimera/   http://www.cgl.ucsf.edu/chimera/videodoc/videodoc.html
SMD: http://www.ks.uiuc.edu/Research/smd_imd/titin/  http://www.ks.uiuc.edu/Research/mechanicals/
MMTSB: http://blue11.bch.msu.edu/mmtsb/Main_Page
 3. Normal mode analysis
ANM: http://ignmtest.ccbb.pitt.edu/cgi-bin/anm/anm1.cgi
GNM:http://en.wikipedia.org/wiki/Gaussian_network_model
GNM and ANM Code: http://www.csb.pitt.edu/resources/gnm/   http://ignmtest.ccbb.pitt.edu/anmdocs/source.html

ProDy:http://prody.csb.pitt.edu/
NMWiz:http://prody.csb.pitt.edu/nmwiz/
Ivet Bahar:http://www.ccbb.pitt.edu/Faculty/bahar/index.php
 4. Persistent homology
Perseus: http://www.sas.upenn.edu/~vnanda/perseus/index.html
Javaplex: http://code.google.com/p/javaplex/  http://javaplex.github.io/javaplex/
Dionysus: http://www.mrzv.org/software/dionysus/
Comptop: http://comptop.stanford.edu/
fullerene: http://www.nanotube.msu.edu/fullerene/fullerene-isomers.html
Others: http://web.cse.ohio-state.edu/~tamaldey/course/CTDA/CTDA.html
http://pub.ist.ac.at/~edels/   http://www.mrzv.org/   http://www.math.upenn.edu/~ghrist/index.html   http://www.math.duke.edu/~hadams/research/   http://www.cs.dartmouth.edu/~afra/papers.html 
 5.Linux related
bash script: http://linuxconfig.org/bash-scripting-tutorial
putty and xming: http://www.siue.edu/~dbock/cmis565/PuTTYColorSettings.htm   http://www.geo.mtu.edu/geoschem/docs/putty_install.html

python: https://docs.python.org/2/index.html
Image converter: http://image.online-convert.com/

MATLAB Codes: http://m2matlabdb.ma.tum.de/index.jsp:
 6.MSU related
HPCC: http://icer.msu.edu/hpcc  https://wiki.hpcc.msu.edu/  https://wiki.hpcc.msu.edu/display/hpccdocs/Documentation+and+User+Manual
Netfiles: https://weblogin.acns.msu.edu/cosign-bin/?cosign-netfiles&https://netfiles.msu.edu/?path=/afs/msu/user/x/i/xiakelin/public
TAX: http://www.ctlr.msu.edu/COFA/Tax.aspx   http://www.ctlr.msu.edu/COPayroll/taxInfoInternationalStaff.aspx
Travel: http://ctlr.msu.edu/cotravel/default.aspx   http://www.math.msu.edu/   http://www.hr.msu.edu/recognition/perks/
Others: https://vprgs.msu.edu/funding